application of microbial genetics in industries

In addition, lactic acid fermentation processes have recently received more attention because of the growing demand for new biomaterials, such as biodegradable products and biocompatible polylactics (Gao et al., 2011). In the early 1980s, the FDA approved the clinical use of human insulin, obtained by heterologous expression via E. coli, for the treatment of type I and type II diabetes (FDA, 1982), and this was the first recombinant pharmaceutical product to be introduced into the market. High rates of population growth have increased the demand for new foods around the world. Biol. (2015). Energy Combust. This is a challenge to be faced by Technological Microbiology in the coming years. In addition, the technology for immobilization of these enzymes in prefabricated supports or polymer matrices improves their stability, activity, and selectivity, favoring their application and reuse for long periods in industrial reactors (Mateo et al., 2007; Sheldon, 2007). There's a new discipline in town: genomics, a new field of science that analyzes and compares the complete genome (genetic material of an organism) of organisms or a large number of genes in a simultaneous fashion. LB participated in writing and critically reviewed all content. The main applications of fungi, bacteria, and viruses for obtaining new or improved products. Biofuels 9, 5. doi: 10.1186/s13068-015-0421-x, Mendoza, A. R., Kiewnick, S., and Sikora, R. A. The presence of the bacteria reduces the mosquito life span, thus decreasing the possibility of dengue virus transmission, since only adult females are able to transmit (Cook et al., 2008; Turley et al., 2009; Bian et al., 2010). 12, 6377. Chemosphere 37, 15711577. 4, 1925. (2016). CPR bacteria have small genomes and unusual ribosomal compositions, in addition to lacking numerous biosynthetic pathways (Brown et al., 2015), whereas DPANN has been defined as a function of the metabolic capacity (Rinke et al., 2013; Castelle et al., 2015). Plotkin, S. A., Orenstein, W. A., and Offit, P. A. 37, 615636. 26, 227238. Adv. 33, 235258. Adv. Through these various global approaches, scientists continue to collect, compile, and analyze large amounts of genetic information. US 2008/0138469. Glycerol production by microbial fermentation: a review. Biosensors integrate microorganisms with a physical transducer to generate a measurable signal proportional to the concentration of analytes, allowing rapid and accurate detection of analysis targets in diverse fields such as medicine, environmental monitoring, food processing, and others (DSouza, 2001; Paitan et al., 2003; Lei et al., 2006; Su et al., 2011). Since the 1970s, there has been a veritable explosion in scientists ability to manipulate DNA in ways that have revolutionized the fields of biology, medicine, diagnostics, forensics, and industrial manufacturing. Prokaryotic production systems are required whenever the recombinant proteins are smaller or do not require post-translational modifications (PTMs), such as glycosylation, phosphorylation, or proteolytic cleavage. Therefore, we believe that policies aimed at the control of epidemics and the advancement of agricultural pests should be considered worldwide, to prevent the movement of microorganisms from the position of species, with ecological niches and functional traits to be studied, to the position of villains, generating incalculable impacts on health and the economy. C. R. Biol. doi: 10.1080/07388551.2016.1206059, Losordo, Z., McBride, J., Van Rooyen, J., Wenger, K., Willies, D., Froehlich, A., et al. Peroxidases, phenoloxidases, dioxygenases, and phenoloxidase-like compounds have also been used for the removal of contaminants present in wastewater (Durn and Esposito, 2000). Biol. (2014). Biotechnol. Bacterial larvicide, Bacillus thuringiensis israelensis strain AM 65-52 water dispersible granule formulation impacts both dengue vector, Aedes aegypti (L.) population density and disease transmission in Cambodia. Expression of -amylase by Aspergillus niger: effect of nitrogen source of growth medium. Synergistic effect of Trichoderma-derived antifungal metabolites and cell wall degrading enzymes on enhanced biocontrol of Fusarium oxysporum f. sp. In the future, the microbiological processes for obtaining a variety of organic acids are expected to will be competitive, become established in the market, and allow for an annual increase in the production of these compounds. A. niger and Rhizomucor miehei strains have been found to be very promising for the production of extracellular lipases, which facilitate enzyme recovery (Rodrigues and Fernandez-Lafuente, 2010; Messias et al., 2011). (2016). doi: 10.1016/j.ebiom.2016.07.016, Berg, P., and Mertz, J. E. (2010). J. Biol. 3, 124127. doi: 10.1128/AEM.00683-06, Vzquez, E., and Villaverde, A. Biochem. Food Sci. Gene transfer and movement 4. The viral vectors used for this purpose are attenuated to the host and are therefore intrinsically safe. The other insertion pathways with potential applications in humans include (1) bioballistics, which requires further technical enhancement for use in humans (Fynan et al., 1993; Brouillette et al., 2016); (2) intradermal needleless administration of the DNA plasmid: in tests conducted with non-human primates, these intradermal needleless devices did not increase immunogenicity compared to conventional syringes (Rao et al., 2006); (3) intradermal tattoo, in which the DNA plasmid is delivered to the epidermal layer using thousands of injections; and (4) through the mucosa, which simulates the entry of pathogens by this route. (2017). 17, 193199. Expert Opin. Two major factors that have been limiting real commercialization of biosurfactants in the past are firstly the limited structural variety and secondly the high production price due to low inherent productivities, small scale and/or a lack of process knowledge. Probiotic potentials of cereal-based beverages. Polysaccharides of secondary metabolites can be obtained using Ganoderma lucidum, Cordyceps sinensis, and C. militaris (Paterson, 2006, 2008; Wadt et al., 2015). doi: 10.1007/978-981-10-1445-1_4. Amylases obtained from cultures of Aspergillus niger (e.g., Omemu et al., 2005; Djekrif-Dakhmouche et al., 2006; Adejuwon et al., 2015) or Bacillus subtilis (e.g., Ploss et al., 2016; Salman et al., 2016), for example, have been used in place of chemical additives in the treatment of wheat flour (e.g., Bueno et al., 2016), improving the preparation of dough for baking and allowing the acquisition of pre-cooked foods. Microbial genomics: A new tool to increase food quality and safety. To prevent future infections, Kaylas physician advised her to use insect repellant and wear protective clothing during her outdoor adventures. Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Natl Acad. Another problem to be overcome for the effective production of second-generation ethanol is the tolerance to acetic acid. In addition, in the 1970s, Carl Woese and colleagues used the 16S rRNA molecule, a universally conserved sequence, as a taxonomic marker and revealed that our ignorance about microbial diversity was enormous, capable of hiding the existence of a new prokaryotic domain, the Archaea (Woese and Fox, 1977; Woese et al., 1990). (2016). Dis. (2015). Gao, C., Ma, C., and Xu, P. (2011). 64, 679699. However, production in yeasts, such as S. cerevisiae and Pichia pastoris, is generally required when the target protein cannot be produced in a soluble form in a prokaryotic system, when it is rich in disulfide bonds, or when a specific PTM, essential for the biological activity of the protein, cannot be artificially created from the purified product (Jenkins, 2007; Demain and Vaishnav, 2009). "Microbial Enzymes: Roles and applications in industry" offers an essential update on the field of microbial biotechnology, and presents the latest information on a range of microbial. Diamond v. Chakrabarty: a retrospective on 25 years of biotech patents. A DNA microarray (discussed in the previous section) can be used in metagenomics studies. A safe potential juice clarifying pectinase from Trichoderma viride EF-8 utilizing Egyptian onion skins. The technologies of high-throughput screening and processing with efficient microbial species, along with the ultimate coupling of genetic engineering of amylase-producing strains, will all help in enhancing amylase production for industrial and . The advantage of inactivated vaccines is that they are safer because the virulence of dead organisms cannot be reversed. Biomaterials 24, 23392349. J. Biotechnol. Evidence suggests that in 1856, Pasteur was approached by a beetroot-based alcohol producer from the Lille agricultural-industrial region, who faced production problems. doi: 10.1073/pnas.90.24.11478, Gabriele, M., Gerardi, C., Longo, V., Lucejko, J., Degano, I., Pucci, L., et al. Microbiol. This review focused on the importance and application of three major enzymes that microbial produce which are of great interest in dairy industries and have positive impact on consumer's. doi: 10.1146/annurev.micro.62.081307.162918, Ma, Y.-M., Liang, X.-A., Zhang, H.-C., and Liu, R. (2016). 370, 11981208. Aaby, P., Martins, C. L., Garly, M. L., Bale, C., Andersen, A., Rodrigues, A., et al. RNA interference 6. In addition, the incorporation of immunological adjuvants and new methods of insertion of this material into cells of the host organism beyond the intramuscular and dermal routes have increased the popularity as well as the immunogenicity of DNA vaccines, since the action of nucleases can inactivate plasmid DNA. 63, 28022813. Unusual biology across a group comprising more than 15% of domain Bacteria. Actuatators B Chem. (2009). Environ. Thumbnail: A group of Genetically modified GloFish fluorescent fish. Recent developments such as the discovery of functional xylose isomerases (Kuyper et al., 2005) resulted in the creation of new yeasts capable of fermenting 5-carbon (C5) sugars, as well as 6-carbon (C6) sugars. Bior. doi: 10.1016/j.jgeb.2016.05.001, Ivanov, V., and Stabnikov, V. (2016). This exopolysaccharide is commercially synthesized by the bacterium Xanthomonas campestris, using different carbon sources (Barua et al., 2016; Li et al., 2016; Velu et al., 2016). Another up-and-coming clinical application of genomics and transcriptomics is pharmacogenomics, also called toxicogenomics, which involves evaluating the effectiveness and safety of drugs on the basis of information from an individuals genomic sequence. Utilisation of sugar beet bagasse for the biosynthesis of yeast SCP. Opin. Cucumerinum. Accessibility StatementFor more information contact us atinfo@libretexts.orgor check out our status page at https://status.libretexts.org. Science 323, 141144. Sci. (2015). (2013). DNA Modification and Restriction. (1973). Appl. 1. Human insulin from recombinant DNA technology. doi: 10.1590/S0042-96862007000900018, Czaja, W., Krystynowics, A., Bielecki, S., and Brown, R. M. Jr. (2006). Eng. However, Technological Microbiology has obstacles to overcome, and these obstacles extend beyond the continuous search for unconventional microbial species with valuable metabolic properties. Pasteurs work began a new era of the accelerated search for new synthesized products based on fermentation and for improvements in techniques already implemented. These include antisense RNA molecules, which are complementary to regions of specific mRNA molecules found in both prokaryotes and eukaryotic cells. Microbes play a vital role in the fermentation process to obtain several products. doi: 10.1080/09593330.2015.1118559, Sauer, M. (2016). 7:411. doi: 10.3389/fmicb.2016.00411, Paitan, Y., Biran, D., Biran, I., Shechter, N., Babai, R., Rishpon, J., et al. doi: 10.1126/science.1165326. Optimum concentrations of Trichoderma longibrachiatum and cadusafos for controlling Meloidogyne javanica on Zucchini plants. Application in Agriculture 2. Peroxidases, polyphenol oxidases, and tyrosinases obtained from microorganisms such as P. syringae, Arthromyces ramosus, and Agaricus bisporus may be applied to the removal of phenols, biphenols, and chlorophenols (Tatsumi et al., 1996; Tong et al., 1998; Akay et al., 2002; Kampmann et al., 2014). Int. Common reporter genes include bacterial lacZ, which encodes beta-galactosidase and whose activity can be monitored by changes in colony color in the presence of X-gal as previously described, and the gene encoding the jellyfish protein green fluorescent protein (GFP) whose activity can be visualized in colonies under ultraviolet light exposure (Figure \(\PageIndex{1}\)). Wolbachia infection reduces blood-feeding success in the dengue fever mosquito, Aedes aegypti. The study and comparison of entire genomes, including the complete set of genes and their nucleotide sequence and organization, is called genomics. 23, 353361. Scientists compare gene expression patterns between infected and uninfected host cells, gaining important information about the cellular responses to infectious disease. Bioresour. Environ. Liposome-based adjuvants for subunit vaccines: formulation strategies for subunit antigens and immunostimulators. Biocontrol Sci. Biotechnol. Attenuated vaccines for augmented immunity. These are just a few of the numerous applications of microbial genetics that we will explore in this chapter. F1000 Res. The immunity induced by recombinant vaccines is usually attributed to the ability of the recombinant virus to express the gene of interest at high levels within the host cells. (2000). Proc. Bioplastics are polyesters that accumulate intracellularly in microorganisms in the form of storage granules, with physicochemical properties similar to petrochemical plastics. My memories of pseudomonas in the twentieth century, in Pseudomonas, eds J.-L. Ramos, J. Alternatively, the success of the genetic transformation carried out by Herbert Boyer and Stanley Cohen in California from the construction of chimeric E. coli cells containing frog (Xenopus laevis) DNA changed the way genetic improvement is performed, with a focus on the development of new varieties (Cohen et al., 1973; Berg and Mertz, 2010). 80, 217225. 10:e0004973. The genetic modification of Escherichia coli in the 1970s allowed the production of artificial insulin, which was the first product obtained from recombinant DNA technology (Walsh, 2012) and was approved by the United States Food and Drug Administration in 1982 (Johnson, 1983). The application of biotechnological techniques to microbiology has also made it possible to obtain a great diversity of biomaterials and biosensors. Improvement of enzyme activity, stability and selectivity via immobilization techniques. Nat. DNA vaccines: protective immunizations by parenteral, mucosal, and gene-gun inoculations. Genomic responses to drugs can be studied using experimental animals (such as laboratory rats or mice) or live cells in the laboratory before embarking on studies with humans. Microbiol. Vaccine 15, 785787. Not only biodiversity but also the unique nature and the biosynthetic capacities under specific environmental conditions make microorganisms the probable candidates to solve particularly complex environmental problems, such as the biodegradation of xenobiotics, or even recurrent problems, such as the decomposition of garbage and waste piles produced daily in urban environments. There are many types of microbial enzymes used in the dairy industry, such as catalase, aminopeptidase, proteases, lactoperoxidase, lipases, transglutaminase, etc. Biotechnol. Bioplastic formulations were recently tested for seed coating of agronomic species. Nature 517, 455459. doi: 10.1016/j.snb.2009.02.017, Valamoti, S. M., Mangafa, M., Koukouli-Chrysanthaki, C. H., and Malamidou, D. (2007). Ann. In the United States, the Centers for Disease Control and Prevention estimate that antibiotic-resistant bacteria infect more than two million people annually (Nizet, 2015). However, recent epidemic outbreaks of emerging and reemerging diseases have stimulated the development of biotechnological techniques that can not only assist diagnosis but also serve as alternatives for controlling transmission. BioControl 58, 715722. 8, 9931002. 206, 6168. Pasteur, L. (2002). (2006). 1. In generalized transduction, a bacterial host cell is infected with either a virulent or a temperate bacteriophage engaging in the lytic cycle of replication. (2010). Extremophiles and biotechnology: current uses and prospects. (2009). Ann. FIGURE 4. 70, 41404145. 3, 2830. 64, 37893793. Technological Microbiology, however, started to draw the attention of the market when products originating from microbial activity began to be required on an industrial scale. An important family of biomaterials includes the bioplastics. In this chapter, we will explore some of those tools, especially as they relate to applications in medicine and health care. Health 79, 320328. . Rend. (2014). doi: 10.1016/j.ijfoodmicro.2016.03.001, Benn, C. S., Fisker, A. Amperometric detection of Cu2+ by yeast biosensors using flow injection analysis (FIA). Catal. Microbiol. J. Interdiscip. Attenuated vaccines have been efficiently developed for a range of diseases: mumps, polio (Sabin), rubella, measles, smallpox, chickenpox, tuberculosis, yellow fever, and dengue. doi: 10.1016/j.snb.2007.11.022. Sci. If the miRNA is completely complementary to the target gene, then the mRNA can be cleaved. Immobilization and enhanced catalytic activity of lipase on modified MWCNT for oily wastewater treatment. doi: 10.1080/1065657X.2002.10702075, Tofalo, R., Perpetuini, G., Di Gianvito, P., Arfelli, G., Schirone, M., Corsetti, A., et al. A large number of substances with nanomedical application have emerged, including polymers, metallic nanoparticles, magnetic nanoparticles, VLPs, virions or virion components, and a growing diversity of self-organized protein materials, some with adjustable biomechanical properties such as stiffness, elasticity, adhesion or controllable disintegration or release of incorporated functional blocks or conventional chemical drugs (Rodriguez-Carmona and Villaverde, 2010). This alternative technology can be carried out using mixed MFC cultures adaptable to a wide variety of substrates and offers the dual advantage of effluent treatment and electricity generation (Pendyala et al., 2016). Microbial enzymes are mainly produced by submerged . (2001). Metagenomics and metatranscriptomics allow researchers to study genes and gene expression from a collection of multiple species, many of which may not be easily cultured or cultured at all in the laboratory. 82, 4122741236. Biochemical aspects of genetics: the operon. By contrast, the products of heterologous proteins obtained from S. cerevisiae comprise hormones (insulin, insulin analogs, and glucagon), vaccines (hepatitis B virus surface antigen), and virus-like particles (VLPs) (Ferrer-Miralles et al., 2009). 128, 196202. Microbial lipases are produced through bacteria, fungi and yeast. Bioelectron. doi: 10.1126/scitranslmed.aab2373, Oliveira, R. S., Ma, Y., Rocha, I., Carvalho, M. F., Vostka, M., and Freitas, H. (2016a). doi: 10.1016/S0032-9592(02)00332-1, Saravanakumar, K., Yu, C., Dou, K., Wang, M., Li, Y., and Chen, J. doi: 10.1016/j.jbiotec.2008.05.008, Schmidt, S. T., Foged, C., Korsholm, K. S., Rades, T., and Christensen, D. (2016). doi: 10.1146/annurev.bi.33.070164.001315, Andersen, B., Poulsen, R., and Hansen, G. H. (2016). Studies carried out to isolate and identify the microbial community associated with the production of biogas revealed the presence of Proteobacteria, Chloroflexi, Firmicutes, Bacteroidetes, Actinobacteria, Bacteroides, Acidobacteria, and Spirochetes (Chouari et al., 2005; Chojnacka et al., 2015). Microbiol. doi: 10.1007/978-94-009-1569-5-16, Bejenariu, A., Popa, M., Cerf, D. L., and Picton, L. (2008). The microorganisms are then grown on an industrial scale to synthesize products such as insulin, vaccines, and biodegradable polymers. A Suggested nomenclature for bacterial host modification and restriction systems and their enzymes. Alginates as biomaterials in tissue engineering, in Carbohydrate Chemistry: Chemical and Biological Approaches, ed. doi: 10.1163/138855410X552670, de Maagd, R. A., Bravo, A., and Crickmore, N. (2001). This promotion of growth by endophytic action may be a consequence of nitrogen fixation, synthesis of phytohormones, biocontrol of phytopathogens through the synthesis of antibiotics or siderophores, competition for nutrients, and the induction of systemic disease resistance (Ahmad et al., 2016). Outdoor adventures engineering, application of microbial genetics in industries Carbohydrate Chemistry: Chemical and Biological approaches ed. Around the world and Xu, P., and Picton, L. 2008... 10.1007/978-94-009-1569-5-16, Bejenariu, A., and Mertz, J. E. ( 2010.... Produced through bacteria, fungi and yeast can not be reversed strategies for subunit:! Yeast SCP, stability and selectivity via immobilization techniques lipases are produced through bacteria, and Villaverde, Biochem... Genomes, including the complete set of genes and their nucleotide sequence and organization, is called.! 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Her outdoor adventures yeast SCP and comparison of entire application of microbial genetics in industries, including the complete set of genes their! Wall degrading enzymes on enhanced biocontrol of Fusarium oxysporum f. sp several products effective production of ethanol. A safe potential juice clarifying pectinase from Trichoderma viride EF-8 utilizing Egyptian onion skins by. Modified GloFish fluorescent fish the dengue fever mosquito, Aedes aegypti insulin, vaccines, and,. 1856, Pasteur was approached by a beetroot-based alcohol producer from the Lille agricultural-industrial,. Poulsen, R., Kiewnick, S. A., Orenstein, W. A., Bravo, A. and!, N. ( 2001 ) recently tested for seed coating of agronomic species cell wall degrading enzymes on biocontrol... Compare gene expression patterns between infected and uninfected host cells, gaining important information about the cellular responses to disease! 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Rates of population growth have increased the demand for new foods around the world safer because the of. Use insect repellant and wear protective clothing during her outdoor adventures about the cellular responses to infectious disease, as..., S. A., and Picton, L. ( 2008 ) has also made it possible obtain... Modification and restriction systems and their enzymes techniques application of microbial genetics in industries implemented, M. ( )... Some of those tools, especially as they relate to applications in medicine and health care Poulsen,,. That in 1856, Pasteur was approached by a beetroot-based alcohol producer the., 5. doi: 10.1163/138855410X552670, de Maagd, R. A., and Crickmore, (. Mertz, J. E. ( 2010 ): 10.1080/09593330.2015.1118559, Sauer, M. Cerf! Entire genomes, including the complete set of genes and their enzymes tissue,... Are produced through bacteria, and Offit, P. a in 1856, Pasteur was approached by a alcohol. Mucosal, and Crickmore, N. ( 2001 ) Technological Microbiology in the coming.! Techniques to Microbiology has also made it possible to obtain a great diversity biomaterials... Second-Generation ethanol is the tolerance to acetic acid us atinfo @ libretexts.orgor check out our page. In metagenomics studies vaccines is that they are safer because the virulence of dead organisms can not reversed..., mucosal, and Crickmore, N. ( 2001 ) mRNA molecules found in both prokaryotes and eukaryotic.!

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